PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109781.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 233aa    MW: 25174.7 Da    PI: 8.6067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-0588110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+ksFs+   L  H  +H
  XP_009109781.1  88 YKCSVCDKSFSSYQALGGHKASH 110
                     9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-987110No hitNo description
PfamPF139121.0E-1388112IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.65888115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-488110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003488110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576672.79E-9138165No hitNo description
PfamPF139128.1E-13143167IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099143170IPR007087Zinc finger, C2H2
SMARTSM003550.17143165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MALEALSSPR LASPVPPLFE DSSRFHGVEH WTKGKRSKRS RSDFNQQNLT EEEYLAFCLL  60
LLARDGNRSN RQPLPPVTAA EKSSSSSYKC SVCDKSFSSY QALGGHKASH RKNSSQTQSG  120
GGDDQSTSAT TTSAVTTGSG KSHVCTICHK SFPSGQALGG HKRCHYEGNN NNTSSVSNSE  180
GAGSTSHVSI SHRGFDLNIP PIPEFSLVNG DDEVMSPMPA KKPRFDFSEK LQH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.8580.0leaf| root| silique
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891940.0AC189194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003O07, complete sequence.
GenBankAC1895550.0AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109781.11e-173PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962891e-133ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A078DLP51e-173A0A078DLP5_BRANA; BnaA08g18790D protein
TrEMBLM4D3691e-173M4D369_BRARP; Uncharacterized protein
STRINGBra010922.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-102salt tolerance zinc finger